Biodiversity
of Fungi in Saltpan Soil from Coastal Area Vedaranyam,
Nagapattinam District, Tamil Nadu
Subha K.*, Kanimozhi K.
and Panneerselvam A.
PG and Research Department of Botany and Microbiology, A.V.V.M Sri Pushpam College (Autonomous), Poondi
613 503, Thanjavur, Tamil Nadu.
*Corresponding Author Email: subhazeeni@gmail.com
ABSTRACT:
In the present study soil sample were
collected from salt pan region of Vedharanyam, Nagapattinam District, Tamilnadu. The physico-chemical
characteristics of soil samples were found to affect the distribution of
population of fungi. The fungal diversity from the soil sample were analysed by plating technique. Fungi isolation was done by
the soil dilution method incubated at 26±2°C for 3-5 days. The predominant
fungi isolated include; Asprgillus flavus, A. terreus, A. sydowi, A. oryzae, A. ruber, A. sulphureus, A. conicus, A. chevalieri, A. flavipes, Absidia glauca, Acrophialophora fusispora, Gliocladium sagariensis, Geotrichum candidum, Penicillium citrinum, P. chrysogenum, P. purpurogenum, Trichoderma harzianum, T. koningii, T. viride and Alternaria alternata.
KEY WORDS: Biodiversity, Fungi, Salt pan soil, coastal, Physico-chemical.
INTRODUCTION:
Vedaranyam region falls in the pro-deltaic region of Cauvery delta of Nagapattinam district, Tamilnadu.
It is a typical arcuate delta and the alignment of
the arc passes through Thiruthuraipoondi. The marine environment
is an untapped source for many useful drugs and an assessment of this potential
is imperative. It is well known that the
antibiotics are medicinally valuable and that the microbes are the potential
sources of antibiotics, which could be profitably used in the pharmaceutical
industries.
Microbes from salt pans are yet to be fully
explored as potential producers of antimicrobial agents. However, few reports
are available on the antimicrobial potential of microorganisms in Indian
slatterns. Mangrove
forests are biodiversity “hotspots” for marine fungi (Shearer et al., 2007) because the bases of
mangrove trunks and aerating roots are permanently or intermittently submerged.
The upper parts of roots and trunks rarely never
reached by the salt water, thus terrestrial fungi and lichens occupy the upper
part of the trees and marine species occupy the lower part. At the interface there is an overlap between
marine and terrestrial fungi (Sarma and Hyde 2001).
Mangroves are intertidal forested wetland
confined to the tropical and subtropical regions (Macintosh and Ashton, 2000).
A mangrove forest is considered a dynamic ecotone (or
transition zone) between terrestrial and marine (Gopal
and Chauhan, 2006).
In its simplest sense, “mangrove” is used as a generic term referring to
a group of woody, halophytic plants that occur along sheltered tropical and
subtropical coastlines.
Mangrove forests are also referred to as
mangrove swamps, tidal forests, tidal swamp forests (Kathiresan
and Bingham, 2001). In the present study isolation and identification of fungi
from salt pan soil from area of Vedaranyam, Nagapattinam
district, Tamilnadu.
MATERIALS AND METHODS:
Collection
of soil sample
Marine soil samples were collected from Salt
Pan environment of Vedharanyam, Nagapattinam
Dt.Tamil Nadu (Fig-1). Soil samples were collected
from the study site at random during the study period. The samples were made at a depth within 10-15
cm from the surface of the soil. The
collected soil samples were brought to the laboratory in sterilized polythene
bags handpicked air, dried and stored in containers for further analysis.
Fig-1
Physico-chemical
analysis of soil
Physico-chemical
characteristics in relation to Temperature, Pressure, pH and Salinity of medium
(Burtseva et
al., 2003; Masuma et al., 2001; Gonda et al., 2000) were analysed.
Isolation
of Mycoflora
Dilution
plating method
Dilution plating technique described by
Warcup (1950) was used to isolate the fungi from
soils. Soil sample weighting 1gm was diluted in10ml of sterile distilled water
and marked as 10-1 to10-9 dilution. 0.1ml of the diluted (10-2 and 10-3)
sample was poured and spread on PDA plates. The plates were incubated at 24±2°C
for 3-5 days and considered as mother culture.
Preparation
of Potato Dextrose Agar Medium
Potato - 200gms
Dextrose - 20gms
Agar - 15gms
Distilled water - 500ml
Sea water - 500ml
pH - 6.6
The potato tubers were peeled and weighed
for about 200g. The tubers were chopped into small pieces with the help of
sterile knife. The chopped potatoes were
transferred into a conical flask containing about 1000ml of distilled water. The content was boiled for 20 minutes. The supernatant were decanted and filtered by
muslin cloth and the filtrate was collected.
Dextrose (20g) and agar (15g) were transferred into the extract and
shacked to dissolve the ingredients. The
medium was made up to 1 litre by addition of
distilled water. The pH of the medium
was observed and adjusted to 6.6 by using 1N hydrochloric acid or sodium
hydroxide drop wise. Finally, the medium
was cotton plugged and autoclaved at 121°C for 15 lbs. To avoid the bacterial contamination streptomycin
sulphate antibiotic (50µg/ml) was added to the
sterile medium. The medium was poured
into the sterile petridish (25ml/ dish). From the dilution of 10-2 to 10-3
0.1ml of sample was inoculated into each plate and have spreaded
over with L-rod. The plates were
incubated at 24±2°C for 3-5 days and considered as mother culture.
Isolation
of Pure Culture
The colonies growing on PDA plates with
different morphology were counted separately. The different fungal colonies
from the mother culture were picked up by sterile inoculation loop and
aseptically inoculated into the PDA plates. These plates were incubated at
24±2°C for 3-5 days, each plate contain single kind of fungi.
Identification
of fungi
Lactophenol Cotton
blue mounting
A drop of lactophenol
cotton blue stain was placed on the clean glass slide, a small tuft of the
fungus, preferable with spores and spore bearing structures were transferred
into the drop, using a flamed, cooled needle and gently tested using mounted
needle. A cover glass
were placed over the preparation and care was taken to avoid trapping
air bubbles in the stain. A thin layer
of DPX mount was placed around the edge of the coverslip. The slide was observed under the microscope (400x). Microphotography of the individual fungal species was
also taken using Nikon phase contrast microscope (Nikan,
Japan).
Identification
Colony colour and morphology were noted
besides hyphal structure, spore size, shapes and
spore bearing structure. Identification has been done by referring the standard
manual Ainsworth et al.,(1973). Spore identification was
achieved by reference to Spore atlases of Gregory (1973) and Anna (1990).
RESULTS AND DISCUSSION:
Mangrove fungi are of enormous scientific
interest, for two major reasons. First,
they constitute the second largest part of the earth’s marine fungi. Second mangrove fungi often posses unique
structures, metabolic pathways, reproductive systems, and sensory and defense
mechanisms because they have adapted to extreme environments. So the mangrove fungi represent a source of
unique genetic information. Indeed, the
vast majority of mangroves fungi have yet to be identified. it is urgent to
develop a fundamental understanding of the genetic, nutrional,
and environmental factors that control the production of primary and secondary
metabolites in mangrove fungi, as a basis for developing new and improved
products (Zhong
– Shan, 2009).
Table.1-Physico-chemical
analysis of soil
|
S. No |
Physico-chemical
parameters |
Analytical
values |
|
1 |
pH |
8.82 |
|
2 |
Electrical conductivity (dsm-1) |
0.18 |
|
3 |
Organic carbon (%) |
0.36 |
|
4 |
Organic matter (%) |
0.72 |
|
5 |
Available Nitrogen (Kg/ac) |
97.9 |
|
6 |
Available Phosphorus (Kg/ac) |
4.98 |
|
7 |
Available Potassium (Kg/ac) |
125 |
|
8 |
Available Zinc (ppm)
|
0.98 |
|
9 |
Available Copper (ppm)
|
0.59 |
|
10 |
Available Iron (ppm)
|
4.53 |
|
11 |
Available Manganese (ppm)
|
2.63 |
|
12 |
Cat ion exchange capacity (c.Mole.
Proton-/kg) |
18.9 |
|
13 |
Calcium |
8.9 |
|
14 |
Magnesium |
7.2 |
|
15 |
Sodium |
1.26 |
|
16 |
Potassium |
0.2 |
Physico-chemical
analysis of Soil
The physico-chemical
features of the test soil were given in Table-1. The physico-chemical
parameters were recorded from the soil samples of coastal area Vedaranyam, Nagai (Dt),
Tamilnadu. Moisture
content appeared to be one of the major factors that support fungal growth in
dates (Hill and Waller, 1999) as both the semi dry and soft types had all the
six species identified from them. Therefore, storage facilities such as sacks,
polythene bags and natural fibre, which are air-tight
being used by the traders on both campuses(Personal observation) for storage of
all the varieties might have encouraged the fungal growth on the two varieties
above. This leads to continuous increase in humidity and temperature of the
dates, which consequently favours fungal growth as
reported by Ahmad (2003).
Biodiversity
of fungi
Isolation
of fungi from salt pan soil
Fungal diversity of any soil depends on a large number of factors of the
soil such as pH, organic contents, and moisture (Alexander 1977).The soil
moisture has a direct effect on the population of fungi positively hence, at
higher moisture, the tolerance and colonization by fungi is badly affected
(Adams et al., 1999). Mehdi and Saifullah (2000) and Mehdi et al., (2000) observed that Deuteromycota was the most common and dominant group. Aspergillus was the most diverse genus, followed by Penicillium, salt
pan yielded the highest number of fungi, followed by Rhizophora nucronata and Cladosporium fagal whereas the least number of fungi
was observed in A. corniculatum
(P<0.001).
Fig-2 Morphological and Microscopic view
(400X) of isolated fungi
All the Deuteromycetes isolated by plating
method reported from marine environment in many parts of Tamil Nadu covering Kanyakumari (Upadhyay et al., 1978). In the present study by
direct plating, 20 species of fungi were isolated from the saltpan soil. The isolated fungi such as Aspergillus flavus, A. terreus, A.sydowi, A.oryzae, A.ruber, A.sulphureus, A.conicus, A.chevalieri, A.flavipes, Absidia glauca, Acrophialophora fusispora, Gliocladium sagariensis, Geotrichum candidum, Penicillium citrinum, P. chrysogenum, P.
purpurogenum, Trichoderma harzianum, T. koningii, T. viride and Alternaria alternata. Out of 20 species, the
maximum number of fungi were belonged to Deuteromycetes (Fig-2).
Marine fungi produce secondary metabolites
that are biologically active to treat certain diseases. Therefore, more researches
have been done to discover the potential use of certain secondary metabolites.
The structures of secondary metabolite produced by the saltpan fungi are unique
as compared to the terrestrial fungi.
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Received on 20.01.2013 Accepted
on 05.02.2013
Modified on 20.01.2013 ©A&V
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Research J. Science and Tech 5(2): April- June, 2013 page 250-254